Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

Author(s):

Megan E. Carey, Zoe A. Dyson, Danielle J. Ingle, Afreenish Amir, Mabel K. Aworh, Marie Anne Chattaway, Ka Lip Chew, John A. Crump, Nicholas A. Feasey, Benjamin P. Howden, Karen H. Keddy, Mailis Maes, Christopher M. Parry, Sandra Van Puyvelde, Hattie E. Webb, Ayorinde Oluwatobiloba Afolayan, Anna P. Alexander, Shalini Anandan, Jason R. Andrews, Philip M. Ashton, Buddha Basnyat, Ashish Bavdekar, Isaac I. Bogoch, John D. Clemens, Kesia Esther da Silva, Anuradha De, Joep de Ligt, Paula Lucia Diaz Guevara, Christiane Dolecek, Shanta Dutta, Marthie M. Ehlers, Louise Francois Watkins, Denise O. Garrett, Gauri Godbole, Melita A. Gordon, Andrew R. Greenhill, Chelsey Griffin, Madhu Gupta, Rene S. Hendriksen, Robert S. Heyderman, Yogesh Hooda, Juan Carlos Hormazabal, Odion O. Ikhimiukor, Junaid Iqbal, Jobin John Jacob, Claire Jenkins, Dasaratha Ramaiah Jinka, Jacob John, Gagandeep Kang, Abdoulie Kanteh, Arti Kapil, Abhilasha Karkey, Samuel Kariuki, Robert A. Kingsley, Roshine Mary Koshy, A. C. Lauer, Myron M. Levine, Ravikumar Kadahalli Lingegowda, Stephen P. Luby, Grant Austin Mackenzie, Tapfumanei Mashe, Chisomo Msefula, Ankur Mutreja, Geetha Nagaraj, Savitha Nagaraj, Satheesh Nair, Take K. Naseri, Susana Nimarota-Brown, Elisabeth Njamkepo, Iruka N. Okeke, Sulochana Putli Bai Perumal, Andrew J. Pollard, Agila Kumari Pragasam, Firdausi Qadri, Farah N. Qamar, Sadia Isfat Ara Rahman, Savitra Devi Rambocus, David A. Rasko, Pallab Ray, Roy Robins-Browne, Temsunaro Rongsen-Chandola, Jean Pierre Rutanga, Samir K. Saha, Senjuti Saha, Karnika Saigal, Mohammad Saiful Islam Sajib, Jessica C. Seidman, Jivan Shakya, Varun Shamanna, Jayanthi Shastri, Rajeev Shrestha, Sonia Sia, Michael J. Sikorski, Ashita Singh, Anthony M. Smith, Kaitlin A. Tagg, Dipesh Tamrakar, Arif Mohammed Tanmoy, Maria Thomas, Mathew S. Thomas, Robert Thomsen, Nicholas R. Thomson, Siaosi Tupua, Krista Vaidya, Mary Valcanis, Balaji Veeraraghavan, François Xavier Weill, Jackie Wright, Gordon Dougan, Silvia Argimón, Jacqueline A. Keane, David M. Aanensen, Stephen Baker, Kathryn E. Holt, Peter Aaby, Ali Abbas, Niyaz Ahmed, Saadia Andleeb, Abraham Aseffa, Kate S. Baker, Adwoa Bentsi-Enchill, Robert F. Breiman, Carl Britto, Josefina Campos, Chih Jun Chen, Chien Shun Chiou, Viengmon Davong, Abul Faiz, Danish Gul, Rumina Hasan, Mochammad Hatta, Aamer Ikram, Lupeoletalalelei Isaia, Jan Jacobs, Simon Kariuki, Fahad Khokhar, Elizabeth Klemm, Laura M.F. Kuijpers, Gemma Langridge, Kruy Lim, Octavie Lunguya, Francisco Luquero, Calman A. Maclennan, Florian Marks, Masatomo Morita, Mutinta Muchimba, James C.L. Mwansa, Kapambwe Mwape, Jason M. Mwenda, John Nash, Kathleen M. Neuzil, Paul Newton, Stephen Obaro, Sophie Octavia, Makoto Ohnishi, Michael Owusu, Ellis Owusu-Dabo, Se Eun Park, Julian Parkhill, Duy Thanh Pham, Marie France Phoba, Derek J. Pickard, Raphael Rakotozandrindrainy, Pilar Ramon-Pardo, Farhan Rasheed, Assaf Rokney, Priscilla Rupali, Ranjit Sah, Sadia Shakoor, Michelo Simuyand, Arvinda Sooka, Jeffrey D. Stanaway, A. Duncan Steele, Bieke Tack, Adama Tall, Neelam Taneja, Mekonnen Teferi, Sofonias Tessema, Gaetan Thilliez, Paul Turner, James E. Ussher, Annavi Marie Villanueva, Bart Weimer, Vanessa K. Wong, Raspail Carrel Founou

Details:

eLife, Volume 12, 2023-01-01, Article number e85867

Article Link: Click here

Affiliations:

• Nuffield Department of Medicine
• The Peter Doherty Institute for Infection and Immunity
• The Aga Khan University
• London School of Hygiene & Tropical Medicine
• Organisation Mondiale de la Santé
• University of Maryland School of Medicine
• Christian Medical College, Vellore
• Kamuzu University of Health Sciences
• Oxford University Clinical Research Unit
• Kwame Nkrumah University of Science & Technology
• Kenya Medical Research Institute
• National Institute for Communicable Diseases
• School of Clinical Medicine
• University of Liverpool
• University of Otago
• Postgraduate Institute of Medical Education & Research, Chandigarh
• Angkor Hospital for Children
• UK Health Security Agency
• Faculty of Health Sciences
• KEM Hospital
• Mahidol Oxford Tropical Medicine Research Unit
• NIHR Oxford Biomedical Research Centre
• Université Paris Cité
• Departement Microbiologie, Immunologie en Transplantatie
• Department of Medicine
• Department of Veterinary Medicine
• National Environment Agency, Singapore
• Institute for Health Metrics and Evaluation
• Dhulikel Hospital, Kathmandu
• University of Rwanda
• Bandim Health Project
• Copperbelt University
• Centre for Infectious Disease Research in Zambia
• Malawi-Liverpool-Wellcome Trust Clinical Research Programme
• Université d'Antananarivo
• Tribhuvan University Teaching Hospital
• Papua New Guinea Institute of Medical Research
• Institut Pasteur de Dakar
• San Lazaro Hospital
• Research Institute for Tropical Medicine
• Armauer Hansen Research Institute
• University of Kufa
• University of Dschang
• Kanchi Kamakoti Childs Trust Hospital
• Hasanuddin University
• International Vaccine Institute, Seoul
• National University of Sciences and Technology
• National Institute of Health Pakistan
• Society for Applied Studies Kolkata
• Allama Iqbal Medical College
• Instituto Nacional de Salud
• Chang Gung Memorial Hospital
• National University Hospital
• National Institute of Infectious Diseases
• Boston Children's Hospital
• University of Hyderabad
• UCLA Fielding School of Public Health
• Prins Leopold Instituut voor Tropische Geneeskunde
• Royal Children's Hospital, Melbourne
• BYL Nair Charitable Hospital & TN Medical College
• National Health Laboratory Service
• Bill & Melinda Gates Foundation
• University College London
• St. John's National Academy Of Health Sciences India
• Centers for Disease Control and Prevention
• University of Toronto Faculty of Medicine
• Liverpool School of Tropical Medicine
• Quadram Institute Bioscience
• Addenbrooke's Hospital
• Yonsei University
• Universität Heidelberg
• University of Nebraska Medical Center
• Leids Universitair Medisch Centrum
• University of California, Davis
• Mahosot Hospital, Lao
• Universiteit Antwerpen
• Faculty of Medicine, Nursing and Health Sciences
• Stanford University
• Technical University of Denmark
• Federation University Australia
• Instituto de Salud Publica de Chile
• National Microbiology Laboratory
• ESR - Environmental Science and Research
• International Centre for Diarrhoeal Disease Research Bangladesh
• Instituto Nacional de Enfermedades Infecciosas
• All India Institute of Medical Sciences, New Delhi
• Kempegowda Institute of Medical Sciences
• National Institute of Cholera and Enteric Diseases India
• Novo Nordisk Foundation
• University of Ibadan
• Christian Medical College & Hospital, Ludhiana
• Taiwan Centers for Disease Control
• Wellcome Sanger Institute
• Korea University
• NC State University
• University of Oxford Medical Sciences Division
• Chelsea and Westminster Hospital
• Ministry of Health
• Center for Vaccine Development and Global Health (CVD)
• College of Medical, Veterinary & Life Sciences
• Emory University
• University of Johannesburg
• School of Veterinary Medicine
• Research Institute of Centre of Expertise and Biological Diagnostic of Cameroon (CEDBCAM-RI)
• Makunda Christian Hospital
• Chinchpada Christian Hospital
• Institute for Research in Science and Technology
• Lady Willingdon Hospital
• Duncan Hospital
• Kasturba Hospital for Infectious Diseases
• Dev Care Foundation
• Global Alliance for Vaccines and Immunization (GAVI)
• Africa Centres for Disease Control and Prevention
• Rural Development Trust Hospital
• International Foundation Against Infectious Diseases in Nigeria
• Center for Infectious Disease Research Zambia
• Pan American Health Organization
• Lusaka Apex Medical University
• University Teaching Hospital of Kinshasa
• Nigeria Field Epidemiology and Laboratory Training Programme
• Child Health Research Foundation
• Dhulikhel Hospital
• National Microbiology Reference Laboratory
• Institut National de Recherche Biomédicale
• Chacha Nehru Bal Chikitsalaya
• Ministry of Health
• Sabin Vaccine Institute
• Sihanouk Hospital Center of HOPE